scvi.data.prefrontalcortex_starmap#

scvi.data.prefrontalcortex_starmap(save_path='data/')[source]#

Loads a starMAP dataset of mouse pre-frontal cortex (Wang et al., 2018).

3,704 cells and 166 genes.

Parameters
save_path : str (default: 'data/')

Location to use when saving/loading the data.

Return type

AnnData

Returns

AnnData with batch info (.obs['batch']), label info (.obs['labels']), spatial info (.obs['x_coord'], .obs['y_coord'])

Examples

>>> import scvi
>>> adata = scvi.data.prefrontalcortex_starmap()