New in 0.15.1 (2022-03-11)#

Changes#

  • Remove labels_key from MULTIVI as it is not used in the model (#1393).

  • Use scvi-tools mean/inv_disp parameterization of negative binomial for JaxSCVI likelihood (#1386).

  • Use setup for Flax-based modules (#1403).

  • Reimplement JaxVAE using inference/generative paradigm with JaxBaseModuleClass (#1406).

  • Use multiple particles optionally in JaxSCVI (#1385).

  • SOLO no longer warns about count data (#1411).

  • Class docs are now one page on docs site (#1415).

  • Copied AnnData objects are assigned a new uuid and transfer is attempted (#1416).

Bug fixes#

  • Fix an issue with using gene lists and proteins lists as well as transform_batch for TOTALVI (#1413).

  • Error gracefully when NaNs present in CategoricalJointObsmField (#1417).

Contributors#