New in 0.10.0 (2021-04-20)#
Changes#
PeakVI minor enhancements to differential accessibility and fix scArches support (#1019)
Add DestVI to the codebase (#1011)
Versioned tutorial links (#1005)
Remove old VAEC (#1006)
Use
.numpy()
to convert torch tensors to numpy ndarrays (#1016)Support backed AnnData (#1017), just load anndata with
scvi.data.read_h5ad(path, backed='r+')
Solo interface enhancements (#1009)
Updated README (#1028)
Use Python warnings instead of logger warnings (#1021)
Change totalVI protein background default to
False
is fewer than 10 proteins used (#1034)
Bug fixes#
Fix
SaveBestState
warning (#1024)New default SCANVI max epochs if loaded with pretrained SCVI model (#1025), restores old
<v0.9
behavior.Fix marginal log likelihood computation, which was only being computed on final minibatch of a dataloader. This bug was introduced in the
0.9.X
versions (#1033).Fix bug where extra categoricals were not properly extended in
transfer_anndata_setup
(#1030).