New in 0.15.2 (2022-03-15)#

Changes#

  • Remove setuptools pinned requirement due to new PyTorch 1.11 fix (#1436).

  • Switch to myst-parsed markdown for docs (#1435).

  • Add prepare_query_data(adata, reference_model) to ArchesMixin to enable query data cleaning prior to reference mapping (#1441).

  • Add Human Lung Cell Atlas tutorial (#1442).

Bug fixes#

  • Errors when arbitrary kwargs are passed into setup_anndata() (#1439).

  • Fix scvi.external.SOLO to use train_size=0.9 by default, which enables early stopping to work properly (#1438).

  • Fix scArches version warning (#1431).

  • Fix backwards compat for SCANVI loading (#1441).

Contributors#