New in 0.16.1 (2022-04-22)

Changes

• Update scArches Pancreas tutorial, DestVI tutorial (#1520).

Breaking changes

• SemiSupervisedDataLoader and SemiSupervisedDataSplitter no longer take unlabeled_category as an initial argument. Instead, the unlabeled_category is fetched from the labels state registry, assuming that the AnnDataManager object is registered with a LabelsWithUnlabeledObsField (#1515).

Bug Fixes

• Bug fixed in SCANVI where self._labeled_indices was being improperly set (#1515).

• Fix issue where load_query_data would not properly add an obs column with the unlabeled category when the labels_key was not present in the query data.

• Disable extension of categories for labels in load_query_data (#1519).

• Fix an issue with prepare_query_data() to ensure it does nothing when genes are completely matched (#1520).

Contributors

• @jjhong922

• @adamgayoso