New in 0.17.4 (2021-09-20)#

Changes#

  • Support for PyTorch Lightning 1.7 #1622.

  • Allow flax to use any mutable states used by a model generically with TrainStateWithState #1665, #1700.

  • Update publication links in README #1667.

  • Docs now include floating window cross references with hoverxref, external links with linkcode, and grid #1678.

Bug Fixes#

  • Fix get_likelihood_parameters() failure when gene_likelihood != "zinb" in RNASeqMixin #1618.

  • Fix exception logic when not using the observed library size in VAE initialization #1660.

  • Replace instances of super().__init__() with an argument in super(), causing autoreload extension to throw errors #1671.

  • Change cell2location tutorial causing docs build to fail #1674.

  • Replace instances of max_epochs as ints for new PyTorch Lightning #1686.

  • Catch case when torch.backends.mps is not implemented #1692.

  • Fix Poisson sampling in sample() #1702.

Contributors#