New in 0.7.0 (2020-10-14)#
scvi is now scvi-tools. Version 0.7 introduces many breaking changes. The best way to learn how to use scvi-tools is with our documentation and tutorials.
New high-level API and data loading, please see tutorials and examples for usage.
GeneExpressionDataset
and associated classes have been removed.Built-in datasets now return
AnnData
objects.scvi-tools
now relies entirely on the [AnnData] format.scvi.models
has been moved toscvi.core.module
.Posterior
classes have been reduced to wrappers onDataLoaders
scvi.inference
has been split toscvi.core.data_loaders
forAnnDataLoader
classes andscvi.core.trainers
for trainer classes.Usage of classes like
Trainer
andAnnDataLoader
now require theAnnData
data object as input.