scvi.data.seqfishplus#
- scvi.data.seqfishplus(save_path='data/', tissue_region='subventricular cortex')[source]#
seqFISH+ of cortex, subventricular zone and olfactory bulb of mouse brain.
seqFISH+ can image mRNAs for 10,000 genes in single cells—with high accuracy and sub-diffraction-limit resolution—in the cortex, subventricular zone and olfactory bulb of mouse brain
- Parameters:
save_path (
str
(default:'data/'
)) – Location to use when saving/loading the data.tissue_region (default:
'subventricular cortex'
) – Region of the mouse brain, Either “subventricular cortex” or “olfactory bulb”
- Returns:
AnnData with batch info (
.obs['batch']
), label info (.obs['labels']
), spatial info (.obs['X']
,.obs['Y']
)- Return type:
Examples
>>> import scvi >>> adata = scvi.data.seqfishplus()