Datasets#
Import scvi-tools as:
import scvi
Built in data#
Here we host some published datasets that are useful for benchmarking and testing models.
Loads a file from cellxgene portal. |
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Dataset of PBMCs measured with CITE-seq (161764 cells). |
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Immune cells from the murine spleen and lymph nodes [Gayoso et al., 2021]. |
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Combined single cell and single nuclei RNA-Seq data of 485K cardiac cells with annotations. |
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Filtered PBMCs from 10x Genomics profiled with RNA and protein. |
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Purified PBMC dataset from: "Massively parallel digital transcriptional profiling of single cells". |
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Loads a file from 10x website. |
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Loads brain-large dataset. |
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Loads pbmc dataset. |
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Loads cortex dataset. |
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seqFISH+ of cortex, subventricular zone and olfactory bulb of mouse brain. |
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Seqfish dataset. |
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Loads osmFISH data of mouse cortex cells from the Linarsson lab. |
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Loads breast cancer dataset. |
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Loads mouse ob dataset. |
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Loads retina dataset. |
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Loads a starMAP dataset of mouse pre-frontal cortex (Wang et al., 2018). |
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Load the cells from the mouse frontal cortex sequenced by the Dropseq technology (Saunders et al., 2018). |