scvi.model.SCANVI
=================

.. currentmodule:: scvi.model

.. add toctree option to make autodoc generate the pages

.. autoclass:: SCANVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.SCANVI.adata
    ~scvi.model.SCANVI.adata_manager
    ~scvi.model.SCANVI.device
    ~scvi.model.SCANVI.history
    ~scvi.model.SCANVI.is_trained
    ~scvi.model.SCANVI.minified_data_type
    ~scvi.model.SCANVI.test_indices
    ~scvi.model.SCANVI.train_indices
    ~scvi.model.SCANVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.SCANVI.convert_legacy_save
    ~scvi.model.SCANVI.deregister_manager
    ~scvi.model.SCANVI.differential_expression
    ~scvi.model.SCANVI.from_scvi_model
    ~scvi.model.SCANVI.get_anndata_manager
    ~scvi.model.SCANVI.get_elbo
    ~scvi.model.SCANVI.get_feature_correlation_matrix
    ~scvi.model.SCANVI.get_from_registry
    ~scvi.model.SCANVI.get_latent_library_size
    ~scvi.model.SCANVI.get_latent_representation
    ~scvi.model.SCANVI.get_likelihood_parameters
    ~scvi.model.SCANVI.get_marginal_ll
    ~scvi.model.SCANVI.get_normalized_expression
    ~scvi.model.SCANVI.get_reconstruction_error
    ~scvi.model.SCANVI.load
    ~scvi.model.SCANVI.load_query_data
    ~scvi.model.SCANVI.load_registry
    ~scvi.model.SCANVI.minify_adata
    ~scvi.model.SCANVI.posterior_predictive_sample
    ~scvi.model.SCANVI.predict
    ~scvi.model.SCANVI.prepare_query_anndata
    ~scvi.model.SCANVI.register_manager
    ~scvi.model.SCANVI.save
    ~scvi.model.SCANVI.setup_anndata
    ~scvi.model.SCANVI.to_device
    ~scvi.model.SCANVI.train
    ~scvi.model.SCANVI.view_anndata_setup
    ~scvi.model.SCANVI.view_setup_args





Attributes
~~~~~~~~~~~



.. autoattribute:: SCANVI.adata

.. autoattribute:: SCANVI.adata_manager

.. autoattribute:: SCANVI.device

.. autoattribute:: SCANVI.history

.. autoattribute:: SCANVI.is_trained

.. autoattribute:: SCANVI.minified_data_type

.. autoattribute:: SCANVI.test_indices

.. autoattribute:: SCANVI.train_indices

.. autoattribute:: SCANVI.validation_indices






Methods
~~~~~~~



.. automethod:: SCANVI.convert_legacy_save

.. automethod:: SCANVI.deregister_manager

.. automethod:: SCANVI.differential_expression

.. automethod:: SCANVI.from_scvi_model

.. automethod:: SCANVI.get_anndata_manager

.. automethod:: SCANVI.get_elbo

.. automethod:: SCANVI.get_feature_correlation_matrix

.. automethod:: SCANVI.get_from_registry

.. automethod:: SCANVI.get_latent_library_size

.. automethod:: SCANVI.get_latent_representation

.. automethod:: SCANVI.get_likelihood_parameters

.. automethod:: SCANVI.get_marginal_ll

.. automethod:: SCANVI.get_normalized_expression

.. automethod:: SCANVI.get_reconstruction_error

.. automethod:: SCANVI.load

.. automethod:: SCANVI.load_query_data

.. automethod:: SCANVI.load_registry

.. automethod:: SCANVI.minify_adata

.. automethod:: SCANVI.posterior_predictive_sample

.. automethod:: SCANVI.predict

.. automethod:: SCANVI.prepare_query_anndata

.. automethod:: SCANVI.register_manager

.. automethod:: SCANVI.save

.. automethod:: SCANVI.setup_anndata

.. automethod:: SCANVI.to_device

.. automethod:: SCANVI.train

.. automethod:: SCANVI.view_anndata_setup

.. automethod:: SCANVI.view_setup_args