scvi.external.METHYLVI
======================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: METHYLVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.METHYLVI.adata
    ~scvi.external.METHYLVI.adata_manager
    ~scvi.external.METHYLVI.device
    ~scvi.external.METHYLVI.history
    ~scvi.external.METHYLVI.is_trained
    ~scvi.external.METHYLVI.summary_string
    ~scvi.external.METHYLVI.test_indices
    ~scvi.external.METHYLVI.train_indices
    ~scvi.external.METHYLVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.METHYLVI.convert_legacy_save
    ~scvi.external.METHYLVI.deregister_manager
    ~scvi.external.METHYLVI.differential_methylation
    ~scvi.external.METHYLVI.get_anndata_manager
    ~scvi.external.METHYLVI.get_elbo
    ~scvi.external.METHYLVI.get_from_registry
    ~scvi.external.METHYLVI.get_latent_representation
    ~scvi.external.METHYLVI.get_marginal_ll
    ~scvi.external.METHYLVI.get_normalized_methylation
    ~scvi.external.METHYLVI.get_reconstruction_error
    ~scvi.external.METHYLVI.get_specific_normalized_methylation
    ~scvi.external.METHYLVI.load
    ~scvi.external.METHYLVI.load_query_data
    ~scvi.external.METHYLVI.load_registry
    ~scvi.external.METHYLVI.posterior_predictive_sample
    ~scvi.external.METHYLVI.prepare_query_anndata
    ~scvi.external.METHYLVI.prepare_query_mudata
    ~scvi.external.METHYLVI.register_manager
    ~scvi.external.METHYLVI.save
    ~scvi.external.METHYLVI.setup_anndata
    ~scvi.external.METHYLVI.setup_mudata
    ~scvi.external.METHYLVI.to_device
    ~scvi.external.METHYLVI.train
    ~scvi.external.METHYLVI.view_anndata_setup
    ~scvi.external.METHYLVI.view_setup_args





Attributes
~~~~~~~~~~~



.. autoattribute:: METHYLVI.adata

.. autoattribute:: METHYLVI.adata_manager

.. autoattribute:: METHYLVI.device

.. autoattribute:: METHYLVI.history

.. autoattribute:: METHYLVI.is_trained

.. autoattribute:: METHYLVI.summary_string

.. autoattribute:: METHYLVI.test_indices

.. autoattribute:: METHYLVI.train_indices

.. autoattribute:: METHYLVI.validation_indices






Methods
~~~~~~~



.. automethod:: METHYLVI.convert_legacy_save

.. automethod:: METHYLVI.deregister_manager

.. automethod:: METHYLVI.differential_methylation

.. automethod:: METHYLVI.get_anndata_manager

.. automethod:: METHYLVI.get_elbo

.. automethod:: METHYLVI.get_from_registry

.. automethod:: METHYLVI.get_latent_representation

.. automethod:: METHYLVI.get_marginal_ll

.. automethod:: METHYLVI.get_normalized_methylation

.. automethod:: METHYLVI.get_reconstruction_error

.. automethod:: METHYLVI.get_specific_normalized_methylation

.. automethod:: METHYLVI.load

.. automethod:: METHYLVI.load_query_data

.. automethod:: METHYLVI.load_registry

.. automethod:: METHYLVI.posterior_predictive_sample

.. automethod:: METHYLVI.prepare_query_anndata

.. automethod:: METHYLVI.prepare_query_mudata

.. automethod:: METHYLVI.register_manager

.. automethod:: METHYLVI.save

.. automethod:: METHYLVI.setup_anndata

.. automethod:: METHYLVI.setup_mudata

.. automethod:: METHYLVI.to_device

.. automethod:: METHYLVI.train

.. automethod:: METHYLVI.view_anndata_setup

.. automethod:: METHYLVI.view_setup_args