scvi.external.SCAR
==================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: SCAR



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.SCAR.adata
    ~scvi.external.SCAR.adata_manager
    ~scvi.external.SCAR.device
    ~scvi.external.SCAR.history
    ~scvi.external.SCAR.is_trained
    ~scvi.external.SCAR.summary_string
    ~scvi.external.SCAR.test_indices
    ~scvi.external.SCAR.train_indices
    ~scvi.external.SCAR.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.SCAR.convert_legacy_save
    ~scvi.external.SCAR.deregister_manager
    ~scvi.external.SCAR.differential_expression
    ~scvi.external.SCAR.get_ambient_profile
    ~scvi.external.SCAR.get_anndata_manager
    ~scvi.external.SCAR.get_denoised_counts
    ~scvi.external.SCAR.get_elbo
    ~scvi.external.SCAR.get_feature_correlation_matrix
    ~scvi.external.SCAR.get_from_registry
    ~scvi.external.SCAR.get_latent_library_size
    ~scvi.external.SCAR.get_latent_representation
    ~scvi.external.SCAR.get_likelihood_parameters
    ~scvi.external.SCAR.get_marginal_ll
    ~scvi.external.SCAR.get_normalized_expression
    ~scvi.external.SCAR.get_reconstruction_error
    ~scvi.external.SCAR.load
    ~scvi.external.SCAR.load_registry
    ~scvi.external.SCAR.posterior_predictive_sample
    ~scvi.external.SCAR.register_manager
    ~scvi.external.SCAR.save
    ~scvi.external.SCAR.setup_anndata
    ~scvi.external.SCAR.to_device
    ~scvi.external.SCAR.train
    ~scvi.external.SCAR.view_anndata_setup
    ~scvi.external.SCAR.view_setup_args





Attributes
~~~~~~~~~~~



.. autoattribute:: SCAR.adata

.. autoattribute:: SCAR.adata_manager

.. autoattribute:: SCAR.device

.. autoattribute:: SCAR.history

.. autoattribute:: SCAR.is_trained

.. autoattribute:: SCAR.summary_string

.. autoattribute:: SCAR.test_indices

.. autoattribute:: SCAR.train_indices

.. autoattribute:: SCAR.validation_indices






Methods
~~~~~~~



.. automethod:: SCAR.convert_legacy_save

.. automethod:: SCAR.deregister_manager

.. automethod:: SCAR.differential_expression

.. automethod:: SCAR.get_ambient_profile

.. automethod:: SCAR.get_anndata_manager

.. automethod:: SCAR.get_denoised_counts

.. automethod:: SCAR.get_elbo

.. automethod:: SCAR.get_feature_correlation_matrix

.. automethod:: SCAR.get_from_registry

.. automethod:: SCAR.get_latent_library_size

.. automethod:: SCAR.get_latent_representation

.. automethod:: SCAR.get_likelihood_parameters

.. automethod:: SCAR.get_marginal_ll

.. automethod:: SCAR.get_normalized_expression

.. automethod:: SCAR.get_reconstruction_error

.. automethod:: SCAR.load

.. automethod:: SCAR.load_registry

.. automethod:: SCAR.posterior_predictive_sample

.. automethod:: SCAR.register_manager

.. automethod:: SCAR.save

.. automethod:: SCAR.setup_anndata

.. automethod:: SCAR.to_device

.. automethod:: SCAR.train

.. automethod:: SCAR.view_anndata_setup

.. automethod:: SCAR.view_setup_args