scvi.external.VELOVI
====================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: VELOVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.VELOVI.adata
    ~scvi.external.VELOVI.adata_manager
    ~scvi.external.VELOVI.device
    ~scvi.external.VELOVI.history
    ~scvi.external.VELOVI.is_trained
    ~scvi.external.VELOVI.summary_string
    ~scvi.external.VELOVI.test_indices
    ~scvi.external.VELOVI.train_indices
    ~scvi.external.VELOVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.VELOVI.convert_legacy_save
    ~scvi.external.VELOVI.deregister_manager
    ~scvi.external.VELOVI.get_anndata_manager
    ~scvi.external.VELOVI.get_directional_uncertainty
    ~scvi.external.VELOVI.get_elbo
    ~scvi.external.VELOVI.get_expression_fit
    ~scvi.external.VELOVI.get_from_registry
    ~scvi.external.VELOVI.get_gene_likelihood
    ~scvi.external.VELOVI.get_latent_representation
    ~scvi.external.VELOVI.get_latent_time
    ~scvi.external.VELOVI.get_marginal_ll
    ~scvi.external.VELOVI.get_permutation_scores
    ~scvi.external.VELOVI.get_rates
    ~scvi.external.VELOVI.get_reconstruction_error
    ~scvi.external.VELOVI.get_state_assignment
    ~scvi.external.VELOVI.get_velocity
    ~scvi.external.VELOVI.load
    ~scvi.external.VELOVI.load_registry
    ~scvi.external.VELOVI.register_manager
    ~scvi.external.VELOVI.save
    ~scvi.external.VELOVI.setup_anndata
    ~scvi.external.VELOVI.to_device
    ~scvi.external.VELOVI.train
    ~scvi.external.VELOVI.view_anndata_setup
    ~scvi.external.VELOVI.view_setup_args





Attributes
~~~~~~~~~~~



.. autoattribute:: VELOVI.adata

.. autoattribute:: VELOVI.adata_manager

.. autoattribute:: VELOVI.device

.. autoattribute:: VELOVI.history

.. autoattribute:: VELOVI.is_trained

.. autoattribute:: VELOVI.summary_string

.. autoattribute:: VELOVI.test_indices

.. autoattribute:: VELOVI.train_indices

.. autoattribute:: VELOVI.validation_indices






Methods
~~~~~~~



.. automethod:: VELOVI.convert_legacy_save

.. automethod:: VELOVI.deregister_manager

.. automethod:: VELOVI.get_anndata_manager

.. automethod:: VELOVI.get_directional_uncertainty

.. automethod:: VELOVI.get_elbo

.. automethod:: VELOVI.get_expression_fit

.. automethod:: VELOVI.get_from_registry

.. automethod:: VELOVI.get_gene_likelihood

.. automethod:: VELOVI.get_latent_representation

.. automethod:: VELOVI.get_latent_time

.. automethod:: VELOVI.get_marginal_ll

.. automethod:: VELOVI.get_permutation_scores

.. automethod:: VELOVI.get_rates

.. automethod:: VELOVI.get_reconstruction_error

.. automethod:: VELOVI.get_state_assignment

.. automethod:: VELOVI.get_velocity

.. automethod:: VELOVI.load

.. automethod:: VELOVI.load_registry

.. automethod:: VELOVI.register_manager

.. automethod:: VELOVI.save

.. automethod:: VELOVI.setup_anndata

.. automethod:: VELOVI.to_device

.. automethod:: VELOVI.train

.. automethod:: VELOVI.view_anndata_setup

.. automethod:: VELOVI.view_setup_args