scvi.model.SCVI
===============

.. currentmodule:: scvi.model

.. add toctree option to make autodoc generate the pages

.. autoclass:: SCVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.SCVI.adata
    ~scvi.model.SCVI.adata_manager
    ~scvi.model.SCVI.device
    ~scvi.model.SCVI.history
    ~scvi.model.SCVI.is_trained
    ~scvi.model.SCVI.minified_data_type
    ~scvi.model.SCVI.summary_string
    ~scvi.model.SCVI.test_indices
    ~scvi.model.SCVI.train_indices
    ~scvi.model.SCVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.SCVI.convert_legacy_save
    ~scvi.model.SCVI.deregister_manager
    ~scvi.model.SCVI.differential_expression
    ~scvi.model.SCVI.get_anndata_manager
    ~scvi.model.SCVI.get_batch_representation
    ~scvi.model.SCVI.get_elbo
    ~scvi.model.SCVI.get_feature_correlation_matrix
    ~scvi.model.SCVI.get_from_registry
    ~scvi.model.SCVI.get_latent_library_size
    ~scvi.model.SCVI.get_latent_representation
    ~scvi.model.SCVI.get_likelihood_parameters
    ~scvi.model.SCVI.get_marginal_ll
    ~scvi.model.SCVI.get_normalized_expression
    ~scvi.model.SCVI.get_reconstruction_error
    ~scvi.model.SCVI.load
    ~scvi.model.SCVI.load_query_data
    ~scvi.model.SCVI.load_registry
    ~scvi.model.SCVI.minify_adata
    ~scvi.model.SCVI.posterior_predictive_sample
    ~scvi.model.SCVI.prepare_query_anndata
    ~scvi.model.SCVI.prepare_query_mudata
    ~scvi.model.SCVI.register_manager
    ~scvi.model.SCVI.save
    ~scvi.model.SCVI.setup_anndata
    ~scvi.model.SCVI.to_device
    ~scvi.model.SCVI.train
    ~scvi.model.SCVI.view_anndata_setup
    ~scvi.model.SCVI.view_setup_args





Attributes
~~~~~~~~~~~



.. autoattribute:: SCVI.adata

.. autoattribute:: SCVI.adata_manager

.. autoattribute:: SCVI.device

.. autoattribute:: SCVI.history

.. autoattribute:: SCVI.is_trained

.. autoattribute:: SCVI.minified_data_type

.. autoattribute:: SCVI.summary_string

.. autoattribute:: SCVI.test_indices

.. autoattribute:: SCVI.train_indices

.. autoattribute:: SCVI.validation_indices






Methods
~~~~~~~



.. automethod:: SCVI.convert_legacy_save

.. automethod:: SCVI.deregister_manager

.. automethod:: SCVI.differential_expression

.. automethod:: SCVI.get_anndata_manager

.. automethod:: SCVI.get_batch_representation

.. automethod:: SCVI.get_elbo

.. automethod:: SCVI.get_feature_correlation_matrix

.. automethod:: SCVI.get_from_registry

.. automethod:: SCVI.get_latent_library_size

.. automethod:: SCVI.get_latent_representation

.. automethod:: SCVI.get_likelihood_parameters

.. automethod:: SCVI.get_marginal_ll

.. automethod:: SCVI.get_normalized_expression

.. automethod:: SCVI.get_reconstruction_error

.. automethod:: SCVI.load

.. automethod:: SCVI.load_query_data

.. automethod:: SCVI.load_registry

.. automethod:: SCVI.minify_adata

.. automethod:: SCVI.posterior_predictive_sample

.. automethod:: SCVI.prepare_query_anndata

.. automethod:: SCVI.prepare_query_mudata

.. automethod:: SCVI.register_manager

.. automethod:: SCVI.save

.. automethod:: SCVI.setup_anndata

.. automethod:: SCVI.to_device

.. automethod:: SCVI.train

.. automethod:: SCVI.view_anndata_setup

.. automethod:: SCVI.view_setup_args