scvi.model.TOTALVI
==================

.. currentmodule:: scvi.model

.. add toctree option to make autodoc generate the pages

.. autoclass:: TOTALVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.TOTALVI.adata
    ~scvi.model.TOTALVI.adata_manager
    ~scvi.model.TOTALVI.device
    ~scvi.model.TOTALVI.history
    ~scvi.model.TOTALVI.is_trained
    ~scvi.model.TOTALVI.minified_data_type
    ~scvi.model.TOTALVI.summary_string
    ~scvi.model.TOTALVI.test_indices
    ~scvi.model.TOTALVI.train_indices
    ~scvi.model.TOTALVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.TOTALVI.convert_legacy_save
    ~scvi.model.TOTALVI.deregister_manager
    ~scvi.model.TOTALVI.differential_expression
    ~scvi.model.TOTALVI.get_anndata_manager
    ~scvi.model.TOTALVI.get_elbo
    ~scvi.model.TOTALVI.get_feature_correlation_matrix
    ~scvi.model.TOTALVI.get_from_registry
    ~scvi.model.TOTALVI.get_latent_library_size
    ~scvi.model.TOTALVI.get_latent_representation
    ~scvi.model.TOTALVI.get_likelihood_parameters
    ~scvi.model.TOTALVI.get_marginal_ll
    ~scvi.model.TOTALVI.get_normalized_expression
    ~scvi.model.TOTALVI.get_protein_background_mean
    ~scvi.model.TOTALVI.get_protein_foreground_probability
    ~scvi.model.TOTALVI.get_reconstruction_error
    ~scvi.model.TOTALVI.load
    ~scvi.model.TOTALVI.load_query_data
    ~scvi.model.TOTALVI.load_registry
    ~scvi.model.TOTALVI.minify_adata
    ~scvi.model.TOTALVI.minify_mudata
    ~scvi.model.TOTALVI.posterior_predictive_sample
    ~scvi.model.TOTALVI.prepare_query_anndata
    ~scvi.model.TOTALVI.prepare_query_mudata
    ~scvi.model.TOTALVI.register_manager
    ~scvi.model.TOTALVI.save
    ~scvi.model.TOTALVI.setup_anndata
    ~scvi.model.TOTALVI.setup_mudata
    ~scvi.model.TOTALVI.to_device
    ~scvi.model.TOTALVI.train
    ~scvi.model.TOTALVI.view_anndata_setup
    ~scvi.model.TOTALVI.view_setup_args





Attributes
~~~~~~~~~~~



.. autoattribute:: TOTALVI.adata

.. autoattribute:: TOTALVI.adata_manager

.. autoattribute:: TOTALVI.device

.. autoattribute:: TOTALVI.history

.. autoattribute:: TOTALVI.is_trained

.. autoattribute:: TOTALVI.minified_data_type

.. autoattribute:: TOTALVI.summary_string

.. autoattribute:: TOTALVI.test_indices

.. autoattribute:: TOTALVI.train_indices

.. autoattribute:: TOTALVI.validation_indices






Methods
~~~~~~~



.. automethod:: TOTALVI.convert_legacy_save

.. automethod:: TOTALVI.deregister_manager

.. automethod:: TOTALVI.differential_expression

.. automethod:: TOTALVI.get_anndata_manager

.. automethod:: TOTALVI.get_elbo

.. automethod:: TOTALVI.get_feature_correlation_matrix

.. automethod:: TOTALVI.get_from_registry

.. automethod:: TOTALVI.get_latent_library_size

.. automethod:: TOTALVI.get_latent_representation

.. automethod:: TOTALVI.get_likelihood_parameters

.. automethod:: TOTALVI.get_marginal_ll

.. automethod:: TOTALVI.get_normalized_expression

.. automethod:: TOTALVI.get_protein_background_mean

.. automethod:: TOTALVI.get_protein_foreground_probability

.. automethod:: TOTALVI.get_reconstruction_error

.. automethod:: TOTALVI.load

.. automethod:: TOTALVI.load_query_data

.. automethod:: TOTALVI.load_registry

.. automethod:: TOTALVI.minify_adata

.. automethod:: TOTALVI.minify_mudata

.. automethod:: TOTALVI.posterior_predictive_sample

.. automethod:: TOTALVI.prepare_query_anndata

.. automethod:: TOTALVI.prepare_query_mudata

.. automethod:: TOTALVI.register_manager

.. automethod:: TOTALVI.save

.. automethod:: TOTALVI.setup_anndata

.. automethod:: TOTALVI.setup_mudata

.. automethod:: TOTALVI.to_device

.. automethod:: TOTALVI.train

.. automethod:: TOTALVI.view_anndata_setup

.. automethod:: TOTALVI.view_setup_args