scRNA-seq

• Atlas-level integration of lung data
• Integrating datasets with scVI in R
• Integration and label transfer with Tabula Muris
• Reference mapping with scvi-tools
• Querying the Human Lung Cell Atlas
• Seed labeling with scANVI
• Linearly decoded VAE
• Identification of zero-inflated genes
• Annotation with CellAssign
• Topic Modeling with Amortized LDA
• Differential expression on C. elegans data
• Isolating perturbation-induced variations with contrastiveVI
• Benchmarking the scANVI fix
• MrVI Quick Start Tutorial
• Integration of scRNA-seq data with substantial batch effects using sysVI