scvi.external.METHYLANVI
========================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: METHYLANVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.METHYLANVI.adata
    ~scvi.external.METHYLANVI.adata_manager
    ~scvi.external.METHYLANVI.device
    ~scvi.external.METHYLANVI.get_normalized_function_name
    ~scvi.external.METHYLANVI.history
    ~scvi.external.METHYLANVI.is_trained
    ~scvi.external.METHYLANVI.registry
    ~scvi.external.METHYLANVI.summary_string
    ~scvi.external.METHYLANVI.test_indices
    ~scvi.external.METHYLANVI.train_indices
    ~scvi.external.METHYLANVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.METHYLANVI.convert_legacy_save
    ~scvi.external.METHYLANVI.data_registry
    ~scvi.external.METHYLANVI.deregister_manager
    ~scvi.external.METHYLANVI.differential_methylation
    ~scvi.external.METHYLANVI.get_anndata_manager
    ~scvi.external.METHYLANVI.get_elbo
    ~scvi.external.METHYLANVI.get_from_registry
    ~scvi.external.METHYLANVI.get_latent_representation
    ~scvi.external.METHYLANVI.get_marginal_ll
    ~scvi.external.METHYLANVI.get_normalized_expression
    ~scvi.external.METHYLANVI.get_normalized_methylation
    ~scvi.external.METHYLANVI.get_ranked_features
    ~scvi.external.METHYLANVI.get_reconstruction_error
    ~scvi.external.METHYLANVI.get_setup_arg
    ~scvi.external.METHYLANVI.get_specific_normalized_methylation
    ~scvi.external.METHYLANVI.get_state_registry
    ~scvi.external.METHYLANVI.get_var_names
    ~scvi.external.METHYLANVI.load
    ~scvi.external.METHYLANVI.load_query_data
    ~scvi.external.METHYLANVI.load_registry
    ~scvi.external.METHYLANVI.predict
    ~scvi.external.METHYLANVI.prepare_query_anndata
    ~scvi.external.METHYLANVI.prepare_query_mudata
    ~scvi.external.METHYLANVI.register_manager
    ~scvi.external.METHYLANVI.save
    ~scvi.external.METHYLANVI.setup_anndata
    ~scvi.external.METHYLANVI.setup_mudata
    ~scvi.external.METHYLANVI.shap_adata_predict
    ~scvi.external.METHYLANVI.shap_predict
    ~scvi.external.METHYLANVI.to_device
    ~scvi.external.METHYLANVI.train
    ~scvi.external.METHYLANVI.transfer_fields
    ~scvi.external.METHYLANVI.update_setup_method_args
    ~scvi.external.METHYLANVI.view_anndata_setup
    ~scvi.external.METHYLANVI.view_registry
    ~scvi.external.METHYLANVI.view_setup_args
    ~scvi.external.METHYLANVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: METHYLANVI.adata

.. autoattribute:: METHYLANVI.adata_manager

.. autoattribute:: METHYLANVI.device

.. autoattribute:: METHYLANVI.get_normalized_function_name

.. autoattribute:: METHYLANVI.history

.. autoattribute:: METHYLANVI.is_trained

.. autoattribute:: METHYLANVI.registry

.. autoattribute:: METHYLANVI.summary_string

.. autoattribute:: METHYLANVI.test_indices

.. autoattribute:: METHYLANVI.train_indices

.. autoattribute:: METHYLANVI.validation_indices






Methods
~~~~~~~



.. automethod:: METHYLANVI.convert_legacy_save

.. automethod:: METHYLANVI.data_registry

.. automethod:: METHYLANVI.deregister_manager

.. automethod:: METHYLANVI.differential_methylation

.. automethod:: METHYLANVI.get_anndata_manager

.. automethod:: METHYLANVI.get_elbo

.. automethod:: METHYLANVI.get_from_registry

.. automethod:: METHYLANVI.get_latent_representation

.. automethod:: METHYLANVI.get_marginal_ll

.. automethod:: METHYLANVI.get_normalized_expression

.. automethod:: METHYLANVI.get_normalized_methylation

.. automethod:: METHYLANVI.get_ranked_features

.. automethod:: METHYLANVI.get_reconstruction_error

.. automethod:: METHYLANVI.get_setup_arg

.. automethod:: METHYLANVI.get_specific_normalized_methylation

.. automethod:: METHYLANVI.get_state_registry

.. automethod:: METHYLANVI.get_var_names

.. automethod:: METHYLANVI.load

.. automethod:: METHYLANVI.load_query_data

.. automethod:: METHYLANVI.load_registry

.. automethod:: METHYLANVI.predict

.. automethod:: METHYLANVI.prepare_query_anndata

.. automethod:: METHYLANVI.prepare_query_mudata

.. automethod:: METHYLANVI.register_manager

.. automethod:: METHYLANVI.save

.. automethod:: METHYLANVI.setup_anndata

.. automethod:: METHYLANVI.setup_mudata

.. automethod:: METHYLANVI.shap_adata_predict

.. automethod:: METHYLANVI.shap_predict

.. automethod:: METHYLANVI.to_device

.. automethod:: METHYLANVI.train

.. automethod:: METHYLANVI.transfer_fields

.. automethod:: METHYLANVI.update_setup_method_args

.. automethod:: METHYLANVI.view_anndata_setup

.. automethod:: METHYLANVI.view_registry

.. automethod:: METHYLANVI.view_setup_args

.. automethod:: METHYLANVI.view_setup_method_args