scvi.external.SysVI
===================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: SysVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.SysVI.adata
    ~scvi.external.SysVI.adata_manager
    ~scvi.external.SysVI.device
    ~scvi.external.SysVI.get_normalized_function_name
    ~scvi.external.SysVI.history
    ~scvi.external.SysVI.is_trained
    ~scvi.external.SysVI.registry
    ~scvi.external.SysVI.summary_string
    ~scvi.external.SysVI.test_indices
    ~scvi.external.SysVI.train_indices
    ~scvi.external.SysVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.SysVI.convert_legacy_save
    ~scvi.external.SysVI.data_registry
    ~scvi.external.SysVI.deregister_manager
    ~scvi.external.SysVI.differential_expression
    ~scvi.external.SysVI.get_anndata_manager
    ~scvi.external.SysVI.get_elbo
    ~scvi.external.SysVI.get_feature_correlation_matrix
    ~scvi.external.SysVI.get_from_registry
    ~scvi.external.SysVI.get_latent_library_size
    ~scvi.external.SysVI.get_latent_representation
    ~scvi.external.SysVI.get_likelihood_parameters
    ~scvi.external.SysVI.get_marginal_ll
    ~scvi.external.SysVI.get_normalized_expression
    ~scvi.external.SysVI.get_reconstruction_error
    ~scvi.external.SysVI.get_setup_arg
    ~scvi.external.SysVI.get_state_registry
    ~scvi.external.SysVI.get_var_names
    ~scvi.external.SysVI.load
    ~scvi.external.SysVI.load_registry
    ~scvi.external.SysVI.posterior_predictive_sample
    ~scvi.external.SysVI.register_manager
    ~scvi.external.SysVI.save
    ~scvi.external.SysVI.setup_anndata
    ~scvi.external.SysVI.to_device
    ~scvi.external.SysVI.train
    ~scvi.external.SysVI.transfer_fields
    ~scvi.external.SysVI.update_setup_method_args
    ~scvi.external.SysVI.view_anndata_setup
    ~scvi.external.SysVI.view_registry
    ~scvi.external.SysVI.view_setup_args
    ~scvi.external.SysVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: SysVI.adata

.. autoattribute:: SysVI.adata_manager

.. autoattribute:: SysVI.device

.. autoattribute:: SysVI.get_normalized_function_name

.. autoattribute:: SysVI.history

.. autoattribute:: SysVI.is_trained

.. autoattribute:: SysVI.registry

.. autoattribute:: SysVI.summary_string

.. autoattribute:: SysVI.test_indices

.. autoattribute:: SysVI.train_indices

.. autoattribute:: SysVI.validation_indices






Methods
~~~~~~~



.. automethod:: SysVI.convert_legacy_save

.. automethod:: SysVI.data_registry

.. automethod:: SysVI.deregister_manager

.. automethod:: SysVI.differential_expression

.. automethod:: SysVI.get_anndata_manager

.. automethod:: SysVI.get_elbo

.. automethod:: SysVI.get_feature_correlation_matrix

.. automethod:: SysVI.get_from_registry

.. automethod:: SysVI.get_latent_library_size

.. automethod:: SysVI.get_latent_representation

.. automethod:: SysVI.get_likelihood_parameters

.. automethod:: SysVI.get_marginal_ll

.. automethod:: SysVI.get_normalized_expression

.. automethod:: SysVI.get_reconstruction_error

.. automethod:: SysVI.get_setup_arg

.. automethod:: SysVI.get_state_registry

.. automethod:: SysVI.get_var_names

.. automethod:: SysVI.load

.. automethod:: SysVI.load_registry

.. automethod:: SysVI.posterior_predictive_sample

.. automethod:: SysVI.register_manager

.. automethod:: SysVI.save

.. automethod:: SysVI.setup_anndata

.. automethod:: SysVI.to_device

.. automethod:: SysVI.train

.. automethod:: SysVI.transfer_fields

.. automethod:: SysVI.update_setup_method_args

.. automethod:: SysVI.view_anndata_setup

.. automethod:: SysVI.view_registry

.. automethod:: SysVI.view_setup_args

.. automethod:: SysVI.view_setup_method_args