scvi.model.PEAKVI
=================

.. currentmodule:: scvi.model

.. add toctree option to make autodoc generate the pages

.. autoclass:: PEAKVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.PEAKVI.adata
    ~scvi.model.PEAKVI.adata_manager
    ~scvi.model.PEAKVI.device
    ~scvi.model.PEAKVI.get_normalized_function_name
    ~scvi.model.PEAKVI.history
    ~scvi.model.PEAKVI.is_trained
    ~scvi.model.PEAKVI.registry
    ~scvi.model.PEAKVI.summary_string
    ~scvi.model.PEAKVI.test_indices
    ~scvi.model.PEAKVI.train_indices
    ~scvi.model.PEAKVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.model.PEAKVI.convert_legacy_save
    ~scvi.model.PEAKVI.data_registry
    ~scvi.model.PEAKVI.deregister_manager
    ~scvi.model.PEAKVI.differential_accessibility
    ~scvi.model.PEAKVI.differential_expression
    ~scvi.model.PEAKVI.get_anndata_manager
    ~scvi.model.PEAKVI.get_elbo
    ~scvi.model.PEAKVI.get_feature_correlation_matrix
    ~scvi.model.PEAKVI.get_from_registry
    ~scvi.model.PEAKVI.get_latent_library_size
    ~scvi.model.PEAKVI.get_latent_representation
    ~scvi.model.PEAKVI.get_library_size_factors
    ~scvi.model.PEAKVI.get_likelihood_parameters
    ~scvi.model.PEAKVI.get_marginal_ll
    ~scvi.model.PEAKVI.get_normalized_accessibility
    ~scvi.model.PEAKVI.get_normalized_expression
    ~scvi.model.PEAKVI.get_reconstruction_error
    ~scvi.model.PEAKVI.get_region_factors
    ~scvi.model.PEAKVI.get_setup_arg
    ~scvi.model.PEAKVI.get_state_registry
    ~scvi.model.PEAKVI.get_var_names
    ~scvi.model.PEAKVI.load
    ~scvi.model.PEAKVI.load_query_data
    ~scvi.model.PEAKVI.load_registry
    ~scvi.model.PEAKVI.posterior_predictive_sample
    ~scvi.model.PEAKVI.prepare_query_anndata
    ~scvi.model.PEAKVI.prepare_query_mudata
    ~scvi.model.PEAKVI.register_manager
    ~scvi.model.PEAKVI.save
    ~scvi.model.PEAKVI.setup_anndata
    ~scvi.model.PEAKVI.to_device
    ~scvi.model.PEAKVI.train
    ~scvi.model.PEAKVI.transfer_fields
    ~scvi.model.PEAKVI.update_setup_method_args
    ~scvi.model.PEAKVI.view_anndata_setup
    ~scvi.model.PEAKVI.view_registry
    ~scvi.model.PEAKVI.view_setup_args
    ~scvi.model.PEAKVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: PEAKVI.adata

.. autoattribute:: PEAKVI.adata_manager

.. autoattribute:: PEAKVI.device

.. autoattribute:: PEAKVI.get_normalized_function_name

.. autoattribute:: PEAKVI.history

.. autoattribute:: PEAKVI.is_trained

.. autoattribute:: PEAKVI.registry

.. autoattribute:: PEAKVI.summary_string

.. autoattribute:: PEAKVI.test_indices

.. autoattribute:: PEAKVI.train_indices

.. autoattribute:: PEAKVI.validation_indices






Methods
~~~~~~~



.. automethod:: PEAKVI.convert_legacy_save

.. automethod:: PEAKVI.data_registry

.. automethod:: PEAKVI.deregister_manager

.. automethod:: PEAKVI.differential_accessibility

.. automethod:: PEAKVI.differential_expression

.. automethod:: PEAKVI.get_anndata_manager

.. automethod:: PEAKVI.get_elbo

.. automethod:: PEAKVI.get_feature_correlation_matrix

.. automethod:: PEAKVI.get_from_registry

.. automethod:: PEAKVI.get_latent_library_size

.. automethod:: PEAKVI.get_latent_representation

.. automethod:: PEAKVI.get_library_size_factors

.. automethod:: PEAKVI.get_likelihood_parameters

.. automethod:: PEAKVI.get_marginal_ll

.. automethod:: PEAKVI.get_normalized_accessibility

.. automethod:: PEAKVI.get_normalized_expression

.. automethod:: PEAKVI.get_reconstruction_error

.. automethod:: PEAKVI.get_region_factors

.. automethod:: PEAKVI.get_setup_arg

.. automethod:: PEAKVI.get_state_registry

.. automethod:: PEAKVI.get_var_names

.. automethod:: PEAKVI.load

.. automethod:: PEAKVI.load_query_data

.. automethod:: PEAKVI.load_registry

.. automethod:: PEAKVI.posterior_predictive_sample

.. automethod:: PEAKVI.prepare_query_anndata

.. automethod:: PEAKVI.prepare_query_mudata

.. automethod:: PEAKVI.register_manager

.. automethod:: PEAKVI.save

.. automethod:: PEAKVI.setup_anndata

.. automethod:: PEAKVI.to_device

.. automethod:: PEAKVI.train

.. automethod:: PEAKVI.transfer_fields

.. automethod:: PEAKVI.update_setup_method_args

.. automethod:: PEAKVI.view_anndata_setup

.. automethod:: PEAKVI.view_registry

.. automethod:: PEAKVI.view_setup_args

.. automethod:: PEAKVI.view_setup_method_args