scvi.external.JaxMRVI
=====================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: JaxMRVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.JaxMRVI.adata
    ~scvi.external.JaxMRVI.adata_manager
    ~scvi.external.JaxMRVI.device
    ~scvi.external.JaxMRVI.get_normalized_function_name
    ~scvi.external.JaxMRVI.history
    ~scvi.external.JaxMRVI.is_trained
    ~scvi.external.JaxMRVI.registry
    ~scvi.external.JaxMRVI.run_id
    ~scvi.external.JaxMRVI.run_name
    ~scvi.external.JaxMRVI.summary_string
    ~scvi.external.JaxMRVI.test_indices
    ~scvi.external.JaxMRVI.train_indices
    ~scvi.external.JaxMRVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.JaxMRVI.compute_local_statistics
    ~scvi.external.JaxMRVI.convert_legacy_save
    ~scvi.external.JaxMRVI.data_registry
    ~scvi.external.JaxMRVI.deregister_manager
    ~scvi.external.JaxMRVI.differential_abundance
    ~scvi.external.JaxMRVI.differential_expression
    ~scvi.external.JaxMRVI.get_aggregated_posterior
    ~scvi.external.JaxMRVI.get_anndata_manager
    ~scvi.external.JaxMRVI.get_from_registry
    ~scvi.external.JaxMRVI.get_latent_representation
    ~scvi.external.JaxMRVI.get_local_sample_distances
    ~scvi.external.JaxMRVI.get_local_sample_representation
    ~scvi.external.JaxMRVI.get_normalized_expression
    ~scvi.external.JaxMRVI.get_outlier_cell_sample_pairs
    ~scvi.external.JaxMRVI.get_setup_arg
    ~scvi.external.JaxMRVI.get_state_registry
    ~scvi.external.JaxMRVI.get_var_names
    ~scvi.external.JaxMRVI.load
    ~scvi.external.JaxMRVI.load_registry
    ~scvi.external.JaxMRVI.register_manager
    ~scvi.external.JaxMRVI.save
    ~scvi.external.JaxMRVI.setup_anndata
    ~scvi.external.JaxMRVI.to_device
    ~scvi.external.JaxMRVI.train
    ~scvi.external.JaxMRVI.transfer_fields
    ~scvi.external.JaxMRVI.update_sample_info
    ~scvi.external.JaxMRVI.update_setup_method_args
    ~scvi.external.JaxMRVI.view_anndata_setup
    ~scvi.external.JaxMRVI.view_registry
    ~scvi.external.JaxMRVI.view_setup_args
    ~scvi.external.JaxMRVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: JaxMRVI.adata

.. autoattribute:: JaxMRVI.adata_manager

.. autoattribute:: JaxMRVI.device

.. autoattribute:: JaxMRVI.get_normalized_function_name

.. autoattribute:: JaxMRVI.history

.. autoattribute:: JaxMRVI.is_trained

.. autoattribute:: JaxMRVI.registry

.. autoattribute:: JaxMRVI.run_id

.. autoattribute:: JaxMRVI.run_name

.. autoattribute:: JaxMRVI.summary_string

.. autoattribute:: JaxMRVI.test_indices

.. autoattribute:: JaxMRVI.train_indices

.. autoattribute:: JaxMRVI.validation_indices






Methods
~~~~~~~



.. automethod:: JaxMRVI.compute_local_statistics

.. automethod:: JaxMRVI.convert_legacy_save

.. automethod:: JaxMRVI.data_registry

.. automethod:: JaxMRVI.deregister_manager

.. automethod:: JaxMRVI.differential_abundance

.. automethod:: JaxMRVI.differential_expression

.. automethod:: JaxMRVI.get_aggregated_posterior

.. automethod:: JaxMRVI.get_anndata_manager

.. automethod:: JaxMRVI.get_from_registry

.. automethod:: JaxMRVI.get_latent_representation

.. automethod:: JaxMRVI.get_local_sample_distances

.. automethod:: JaxMRVI.get_local_sample_representation

.. automethod:: JaxMRVI.get_normalized_expression

.. automethod:: JaxMRVI.get_outlier_cell_sample_pairs

.. automethod:: JaxMRVI.get_setup_arg

.. automethod:: JaxMRVI.get_state_registry

.. automethod:: JaxMRVI.get_var_names

.. automethod:: JaxMRVI.load

.. automethod:: JaxMRVI.load_registry

.. automethod:: JaxMRVI.register_manager

.. automethod:: JaxMRVI.save

.. automethod:: JaxMRVI.setup_anndata

.. automethod:: JaxMRVI.to_device

.. automethod:: JaxMRVI.train

.. automethod:: JaxMRVI.transfer_fields

.. automethod:: JaxMRVI.update_sample_info

.. automethod:: JaxMRVI.update_setup_method_args

.. automethod:: JaxMRVI.view_anndata_setup

.. automethod:: JaxMRVI.view_registry

.. automethod:: JaxMRVI.view_setup_args

.. automethod:: JaxMRVI.view_setup_method_args