scvi.external.TorchMRVI
=======================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: TorchMRVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.TorchMRVI.adata
    ~scvi.external.TorchMRVI.adata_manager
    ~scvi.external.TorchMRVI.device
    ~scvi.external.TorchMRVI.get_normalized_function_name
    ~scvi.external.TorchMRVI.history
    ~scvi.external.TorchMRVI.is_trained
    ~scvi.external.TorchMRVI.minified_data_type
    ~scvi.external.TorchMRVI.registry
    ~scvi.external.TorchMRVI.run_id
    ~scvi.external.TorchMRVI.run_name
    ~scvi.external.TorchMRVI.summary_string
    ~scvi.external.TorchMRVI.test_indices
    ~scvi.external.TorchMRVI.train_indices
    ~scvi.external.TorchMRVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.TorchMRVI.compute_local_statistics
    ~scvi.external.TorchMRVI.convert_legacy_save
    ~scvi.external.TorchMRVI.data_registry
    ~scvi.external.TorchMRVI.deregister_manager
    ~scvi.external.TorchMRVI.differential_abundance
    ~scvi.external.TorchMRVI.differential_expression
    ~scvi.external.TorchMRVI.get_aggregated_posterior
    ~scvi.external.TorchMRVI.get_anndata_manager
    ~scvi.external.TorchMRVI.get_batch_representation
    ~scvi.external.TorchMRVI.get_elbo
    ~scvi.external.TorchMRVI.get_feature_correlation_matrix
    ~scvi.external.TorchMRVI.get_from_registry
    ~scvi.external.TorchMRVI.get_importance_weights
    ~scvi.external.TorchMRVI.get_latent_library_size
    ~scvi.external.TorchMRVI.get_latent_representation
    ~scvi.external.TorchMRVI.get_likelihood_parameters
    ~scvi.external.TorchMRVI.get_local_sample_distances
    ~scvi.external.TorchMRVI.get_local_sample_representation
    ~scvi.external.TorchMRVI.get_marginal_ll
    ~scvi.external.TorchMRVI.get_normalized_expression
    ~scvi.external.TorchMRVI.get_outlier_cell_sample_pairs
    ~scvi.external.TorchMRVI.get_reconstruction_error
    ~scvi.external.TorchMRVI.get_setup_arg
    ~scvi.external.TorchMRVI.get_state_registry
    ~scvi.external.TorchMRVI.get_var_names
    ~scvi.external.TorchMRVI.load
    ~scvi.external.TorchMRVI.load_query_data
    ~scvi.external.TorchMRVI.load_registry
    ~scvi.external.TorchMRVI.minify_adata
    ~scvi.external.TorchMRVI.posterior_predictive_sample
    ~scvi.external.TorchMRVI.prepare_query_anndata
    ~scvi.external.TorchMRVI.prepare_query_mudata
    ~scvi.external.TorchMRVI.register_manager
    ~scvi.external.TorchMRVI.save
    ~scvi.external.TorchMRVI.setup_anndata
    ~scvi.external.TorchMRVI.to_device
    ~scvi.external.TorchMRVI.train
    ~scvi.external.TorchMRVI.transfer_fields
    ~scvi.external.TorchMRVI.update_sample_info
    ~scvi.external.TorchMRVI.update_setup_method_args
    ~scvi.external.TorchMRVI.view_anndata_setup
    ~scvi.external.TorchMRVI.view_registry
    ~scvi.external.TorchMRVI.view_setup_args
    ~scvi.external.TorchMRVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: TorchMRVI.adata

.. autoattribute:: TorchMRVI.adata_manager

.. autoattribute:: TorchMRVI.device

.. autoattribute:: TorchMRVI.get_normalized_function_name

.. autoattribute:: TorchMRVI.history

.. autoattribute:: TorchMRVI.is_trained

.. autoattribute:: TorchMRVI.minified_data_type

.. autoattribute:: TorchMRVI.registry

.. autoattribute:: TorchMRVI.run_id

.. autoattribute:: TorchMRVI.run_name

.. autoattribute:: TorchMRVI.summary_string

.. autoattribute:: TorchMRVI.test_indices

.. autoattribute:: TorchMRVI.train_indices

.. autoattribute:: TorchMRVI.validation_indices






Methods
~~~~~~~



.. automethod:: TorchMRVI.compute_local_statistics

.. automethod:: TorchMRVI.convert_legacy_save

.. automethod:: TorchMRVI.data_registry

.. automethod:: TorchMRVI.deregister_manager

.. automethod:: TorchMRVI.differential_abundance

.. automethod:: TorchMRVI.differential_expression

.. automethod:: TorchMRVI.get_aggregated_posterior

.. automethod:: TorchMRVI.get_anndata_manager

.. automethod:: TorchMRVI.get_batch_representation

.. automethod:: TorchMRVI.get_elbo

.. automethod:: TorchMRVI.get_feature_correlation_matrix

.. automethod:: TorchMRVI.get_from_registry

.. automethod:: TorchMRVI.get_importance_weights

.. automethod:: TorchMRVI.get_latent_library_size

.. automethod:: TorchMRVI.get_latent_representation

.. automethod:: TorchMRVI.get_likelihood_parameters

.. automethod:: TorchMRVI.get_local_sample_distances

.. automethod:: TorchMRVI.get_local_sample_representation

.. automethod:: TorchMRVI.get_marginal_ll

.. automethod:: TorchMRVI.get_normalized_expression

.. automethod:: TorchMRVI.get_outlier_cell_sample_pairs

.. automethod:: TorchMRVI.get_reconstruction_error

.. automethod:: TorchMRVI.get_setup_arg

.. automethod:: TorchMRVI.get_state_registry

.. automethod:: TorchMRVI.get_var_names

.. automethod:: TorchMRVI.load

.. automethod:: TorchMRVI.load_query_data

.. automethod:: TorchMRVI.load_registry

.. automethod:: TorchMRVI.minify_adata

.. automethod:: TorchMRVI.posterior_predictive_sample

.. automethod:: TorchMRVI.prepare_query_anndata

.. automethod:: TorchMRVI.prepare_query_mudata

.. automethod:: TorchMRVI.register_manager

.. automethod:: TorchMRVI.save

.. automethod:: TorchMRVI.setup_anndata

.. automethod:: TorchMRVI.to_device

.. automethod:: TorchMRVI.train

.. automethod:: TorchMRVI.transfer_fields

.. automethod:: TorchMRVI.update_sample_info

.. automethod:: TorchMRVI.update_setup_method_args

.. automethod:: TorchMRVI.view_anndata_setup

.. automethod:: TorchMRVI.view_registry

.. automethod:: TorchMRVI.view_setup_args

.. automethod:: TorchMRVI.view_setup_method_args