# R Tutorials

```{toctree}
:maxdepth: 1

notebooks/r/python_in_R
notebooks/r/api_overview_in_R
notebooks/r/scvi_in_R
notebooks/r/totalvi_in_R
notebooks/r/peakvi_in_R
notebooks/r/DestVI_in_R
```

```{customcard}
:path: notebooks/r/python_in_R
:tags: Dev

Perform basic Python operations in an R environment
```

```{customcard}
:path: notebooks/quick_start/api_overview_in_R
:tags: Analysis, Differential-comparison, Dimensionality-reduction, Removal-of-variance, Dev, Integration

Go through the typical steps of an scvi-tools workflow in R
```

```{customcard}
:path: notebooks/r/scvi_in_R
:tags: Analysis, Integration, Differential-comparison, Dimensionality-reduction, Removal-of-variance

Use basic scvi-tools functionality in R including integration of datasets
```

```{customcard}
:path: notebooks/r/totalvi_in_R
:tags: Dimensionality-reduction, Removal-of-variance

Use scvi-tools functionality in R to analyze CITE-seq data
```

```{customcard}
:path: notebooks/r/peakvi_in_R
:tags: Analysis, Integration, Differential-comparison, Modality-imputation, Dimensionality-reduction

Use scvi-tools functionality in R to analyze scATAC-seq data
```

```{customcard}
:path: notebooks/r/DestVI_in_R
:tags: Deconvolution, Modality-imputation, Differential-comparison

Use scvi-tools functionality in R to analyze spatial transcriptomics datasets
```