scvi.external.DIAGVI
====================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: DIAGVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.DIAGVI.adata
    ~scvi.external.DIAGVI.adata_manager
    ~scvi.external.DIAGVI.device
    ~scvi.external.DIAGVI.get_normalized_function_name
    ~scvi.external.DIAGVI.history
    ~scvi.external.DIAGVI.is_trained
    ~scvi.external.DIAGVI.registry
    ~scvi.external.DIAGVI.run_id
    ~scvi.external.DIAGVI.run_name
    ~scvi.external.DIAGVI.summary_string
    ~scvi.external.DIAGVI.test_indices
    ~scvi.external.DIAGVI.train_indices
    ~scvi.external.DIAGVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.DIAGVI.construct_custom_guidance_graph
    ~scvi.external.DIAGVI.convert_legacy_save
    ~scvi.external.DIAGVI.data_registry
    ~scvi.external.DIAGVI.deregister_manager
    ~scvi.external.DIAGVI.differential_abundance
    ~scvi.external.DIAGVI.get_aggregated_posterior
    ~scvi.external.DIAGVI.get_anndata_manager
    ~scvi.external.DIAGVI.get_elbo
    ~scvi.external.DIAGVI.get_from_registry
    ~scvi.external.DIAGVI.get_imputed_values
    ~scvi.external.DIAGVI.get_latent_representation
    ~scvi.external.DIAGVI.get_marginal_ll
    ~scvi.external.DIAGVI.get_normalized_expression
    ~scvi.external.DIAGVI.get_reconstruction_error
    ~scvi.external.DIAGVI.get_setup_arg
    ~scvi.external.DIAGVI.get_state_registry
    ~scvi.external.DIAGVI.get_var_names
    ~scvi.external.DIAGVI.load
    ~scvi.external.DIAGVI.load_registry
    ~scvi.external.DIAGVI.posterior_predictive_sample
    ~scvi.external.DIAGVI.predict_celltype
    ~scvi.external.DIAGVI.register_manager
    ~scvi.external.DIAGVI.save
    ~scvi.external.DIAGVI.setup_anndata
    ~scvi.external.DIAGVI.setup_mudata
    ~scvi.external.DIAGVI.to_device
    ~scvi.external.DIAGVI.train
    ~scvi.external.DIAGVI.transfer_fields
    ~scvi.external.DIAGVI.update_setup_method_args
    ~scvi.external.DIAGVI.view_anndata_setup
    ~scvi.external.DIAGVI.view_registry
    ~scvi.external.DIAGVI.view_setup_args
    ~scvi.external.DIAGVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: DIAGVI.adata

.. autoattribute:: DIAGVI.adata_manager

.. autoattribute:: DIAGVI.device

.. autoattribute:: DIAGVI.get_normalized_function_name

.. autoattribute:: DIAGVI.history

.. autoattribute:: DIAGVI.is_trained

.. autoattribute:: DIAGVI.registry

.. autoattribute:: DIAGVI.run_id

.. autoattribute:: DIAGVI.run_name

.. autoattribute:: DIAGVI.summary_string

.. autoattribute:: DIAGVI.test_indices

.. autoattribute:: DIAGVI.train_indices

.. autoattribute:: DIAGVI.validation_indices






Methods
~~~~~~~



.. automethod:: DIAGVI.construct_custom_guidance_graph

.. automethod:: DIAGVI.convert_legacy_save

.. automethod:: DIAGVI.data_registry

.. automethod:: DIAGVI.deregister_manager

.. automethod:: DIAGVI.differential_abundance

.. automethod:: DIAGVI.get_aggregated_posterior

.. automethod:: DIAGVI.get_anndata_manager

.. automethod:: DIAGVI.get_elbo

.. automethod:: DIAGVI.get_from_registry

.. automethod:: DIAGVI.get_imputed_values

.. automethod:: DIAGVI.get_latent_representation

.. automethod:: DIAGVI.get_marginal_ll

.. automethod:: DIAGVI.get_normalized_expression

.. automethod:: DIAGVI.get_reconstruction_error

.. automethod:: DIAGVI.get_setup_arg

.. automethod:: DIAGVI.get_state_registry

.. automethod:: DIAGVI.get_var_names

.. automethod:: DIAGVI.load

.. automethod:: DIAGVI.load_registry

.. automethod:: DIAGVI.posterior_predictive_sample

.. automethod:: DIAGVI.predict_celltype

.. automethod:: DIAGVI.register_manager

.. automethod:: DIAGVI.save

.. automethod:: DIAGVI.setup_anndata

.. automethod:: DIAGVI.setup_mudata

.. automethod:: DIAGVI.to_device

.. automethod:: DIAGVI.train

.. automethod:: DIAGVI.transfer_fields

.. automethod:: DIAGVI.update_setup_method_args

.. automethod:: DIAGVI.view_anndata_setup

.. automethod:: DIAGVI.view_registry

.. automethod:: DIAGVI.view_setup_args

.. automethod:: DIAGVI.view_setup_method_args