scvi.external.Decipher
======================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: Decipher



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.Decipher.adata
    ~scvi.external.Decipher.adata_manager
    ~scvi.external.Decipher.device
    ~scvi.external.Decipher.get_normalized_function_name
    ~scvi.external.Decipher.history
    ~scvi.external.Decipher.is_trained
    ~scvi.external.Decipher.registry
    ~scvi.external.Decipher.run_id
    ~scvi.external.Decipher.run_name
    ~scvi.external.Decipher.summary_string
    ~scvi.external.Decipher.test_indices
    ~scvi.external.Decipher.train_indices
    ~scvi.external.Decipher.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~scvi.external.Decipher.compute_decipher_time
    ~scvi.external.Decipher.compute_gene_patterns
    ~scvi.external.Decipher.compute_imputed_gene_expression
    ~scvi.external.Decipher.convert_legacy_save
    ~scvi.external.Decipher.data_registry
    ~scvi.external.Decipher.deregister_manager
    ~scvi.external.Decipher.differential_abundance
    ~scvi.external.Decipher.get_anndata_manager
    ~scvi.external.Decipher.get_from_registry
    ~scvi.external.Decipher.get_latent_representation
    ~scvi.external.Decipher.get_normalized_expression
    ~scvi.external.Decipher.get_setup_arg
    ~scvi.external.Decipher.get_state_registry
    ~scvi.external.Decipher.get_var_names
    ~scvi.external.Decipher.load
    ~scvi.external.Decipher.load_registry
    ~scvi.external.Decipher.register_manager
    ~scvi.external.Decipher.save
    ~scvi.external.Decipher.setup_anndata
    ~scvi.external.Decipher.to_device
    ~scvi.external.Decipher.train
    ~scvi.external.Decipher.transfer_fields
    ~scvi.external.Decipher.update_setup_method_args
    ~scvi.external.Decipher.view_anndata_setup
    ~scvi.external.Decipher.view_registry
    ~scvi.external.Decipher.view_setup_args
    ~scvi.external.Decipher.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: Decipher.adata

.. autoattribute:: Decipher.adata_manager

.. autoattribute:: Decipher.device

.. autoattribute:: Decipher.get_normalized_function_name

.. autoattribute:: Decipher.history

.. autoattribute:: Decipher.is_trained

.. autoattribute:: Decipher.registry

.. autoattribute:: Decipher.run_id

.. autoattribute:: Decipher.run_name

.. autoattribute:: Decipher.summary_string

.. autoattribute:: Decipher.test_indices

.. autoattribute:: Decipher.train_indices

.. autoattribute:: Decipher.validation_indices






Methods
~~~~~~~



.. automethod:: Decipher.compute_decipher_time

.. automethod:: Decipher.compute_gene_patterns

.. automethod:: Decipher.compute_imputed_gene_expression

.. automethod:: Decipher.convert_legacy_save

.. automethod:: Decipher.data_registry

.. automethod:: Decipher.deregister_manager

.. automethod:: Decipher.differential_abundance

.. automethod:: Decipher.get_anndata_manager

.. automethod:: Decipher.get_from_registry

.. automethod:: Decipher.get_latent_representation

.. automethod:: Decipher.get_normalized_expression

.. automethod:: Decipher.get_setup_arg

.. automethod:: Decipher.get_state_registry

.. automethod:: Decipher.get_var_names

.. automethod:: Decipher.load

.. automethod:: Decipher.load_registry

.. automethod:: Decipher.register_manager

.. automethod:: Decipher.save

.. automethod:: Decipher.setup_anndata

.. automethod:: Decipher.to_device

.. automethod:: Decipher.train

.. automethod:: Decipher.transfer_fields

.. automethod:: Decipher.update_setup_method_args

.. automethod:: Decipher.view_anndata_setup

.. automethod:: Decipher.view_registry

.. automethod:: Decipher.view_setup_args

.. automethod:: Decipher.view_setup_method_args