scvi.external.METHYLVI
======================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: METHYLVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~METHYLVI.adata
    ~METHYLVI.adata_manager
    ~METHYLVI.device
    ~METHYLVI.get_normalized_function_name
    ~METHYLVI.history
    ~METHYLVI.is_trained
    ~METHYLVI.registry
    ~METHYLVI.run_id
    ~METHYLVI.run_name
    ~METHYLVI.summary_string
    ~METHYLVI.test_indices
    ~METHYLVI.train_indices
    ~METHYLVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~METHYLVI.convert_legacy_save
    ~METHYLVI.data_registry
    ~METHYLVI.deregister_manager
    ~METHYLVI.differential_abundance
    ~METHYLVI.differential_methylation
    ~METHYLVI.get_aggregated_posterior
    ~METHYLVI.get_anndata_manager
    ~METHYLVI.get_elbo
    ~METHYLVI.get_from_registry
    ~METHYLVI.get_latent_representation
    ~METHYLVI.get_marginal_ll
    ~METHYLVI.get_normalized_expression
    ~METHYLVI.get_normalized_methylation
    ~METHYLVI.get_reconstruction_error
    ~METHYLVI.get_setup_arg
    ~METHYLVI.get_specific_normalized_methylation
    ~METHYLVI.get_state_registry
    ~METHYLVI.get_var_names
    ~METHYLVI.load
    ~METHYLVI.load_query_data
    ~METHYLVI.load_registry
    ~METHYLVI.posterior_predictive_sample
    ~METHYLVI.prepare_query_anndata
    ~METHYLVI.prepare_query_mudata
    ~METHYLVI.register_manager
    ~METHYLVI.save
    ~METHYLVI.setup_annbatch
    ~METHYLVI.setup_anndata
    ~METHYLVI.setup_mudata
    ~METHYLVI.to_device
    ~METHYLVI.train
    ~METHYLVI.transfer_fields
    ~METHYLVI.update_setup_method_args
    ~METHYLVI.view_anndata_setup
    ~METHYLVI.view_registry
    ~METHYLVI.view_setup_args
    ~METHYLVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: METHYLVI.adata

.. autoattribute:: METHYLVI.adata_manager

.. autoattribute:: METHYLVI.device

.. autoattribute:: METHYLVI.get_normalized_function_name

.. autoattribute:: METHYLVI.history

.. autoattribute:: METHYLVI.is_trained

.. autoattribute:: METHYLVI.registry

.. autoattribute:: METHYLVI.run_id

.. autoattribute:: METHYLVI.run_name

.. autoattribute:: METHYLVI.summary_string

.. autoattribute:: METHYLVI.test_indices

.. autoattribute:: METHYLVI.train_indices

.. autoattribute:: METHYLVI.validation_indices






Methods
~~~~~~~



.. automethod:: METHYLVI.convert_legacy_save

.. automethod:: METHYLVI.data_registry

.. automethod:: METHYLVI.deregister_manager

.. automethod:: METHYLVI.differential_abundance

.. automethod:: METHYLVI.differential_methylation

.. automethod:: METHYLVI.get_aggregated_posterior

.. automethod:: METHYLVI.get_anndata_manager

.. automethod:: METHYLVI.get_elbo

.. automethod:: METHYLVI.get_from_registry

.. automethod:: METHYLVI.get_latent_representation

.. automethod:: METHYLVI.get_marginal_ll

.. automethod:: METHYLVI.get_normalized_expression

.. automethod:: METHYLVI.get_normalized_methylation

.. automethod:: METHYLVI.get_reconstruction_error

.. automethod:: METHYLVI.get_setup_arg

.. automethod:: METHYLVI.get_specific_normalized_methylation

.. automethod:: METHYLVI.get_state_registry

.. automethod:: METHYLVI.get_var_names

.. automethod:: METHYLVI.load

.. automethod:: METHYLVI.load_query_data

.. automethod:: METHYLVI.load_registry

.. automethod:: METHYLVI.posterior_predictive_sample

.. automethod:: METHYLVI.prepare_query_anndata

.. automethod:: METHYLVI.prepare_query_mudata

.. automethod:: METHYLVI.register_manager

.. automethod:: METHYLVI.save

.. automethod:: METHYLVI.setup_annbatch

.. automethod:: METHYLVI.setup_anndata

.. automethod:: METHYLVI.setup_mudata

.. automethod:: METHYLVI.to_device

.. automethod:: METHYLVI.train

.. automethod:: METHYLVI.transfer_fields

.. automethod:: METHYLVI.update_setup_method_args

.. automethod:: METHYLVI.view_anndata_setup

.. automethod:: METHYLVI.view_registry

.. automethod:: METHYLVI.view_setup_args

.. automethod:: METHYLVI.view_setup_method_args