scvi.external.RESOLVI
=====================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: RESOLVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~RESOLVI.adata
    ~RESOLVI.adata_manager
    ~RESOLVI.device
    ~RESOLVI.get_normalized_function_name
    ~RESOLVI.history
    ~RESOLVI.is_trained
    ~RESOLVI.registry
    ~RESOLVI.run_id
    ~RESOLVI.run_name
    ~RESOLVI.summary_string
    ~RESOLVI.test_indices
    ~RESOLVI.train_indices
    ~RESOLVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~RESOLVI.compute_dataset_dependent_priors
    ~RESOLVI.convert_legacy_save
    ~RESOLVI.data_registry
    ~RESOLVI.deregister_manager
    ~RESOLVI.differential_abundance
    ~RESOLVI.differential_expression
    ~RESOLVI.differential_niche_abundance
    ~RESOLVI.get_anndata_manager
    ~RESOLVI.get_from_registry
    ~RESOLVI.get_latent_representation
    ~RESOLVI.get_neighbor_abundance
    ~RESOLVI.get_normalized_expression
    ~RESOLVI.get_normalized_expression_importance
    ~RESOLVI.get_setup_arg
    ~RESOLVI.get_state_registry
    ~RESOLVI.get_var_names
    ~RESOLVI.load
    ~RESOLVI.load_query_data
    ~RESOLVI.load_registry
    ~RESOLVI.predict
    ~RESOLVI.prepare_query_anndata
    ~RESOLVI.prepare_query_mudata
    ~RESOLVI.register_manager
    ~RESOLVI.sample_posterior
    ~RESOLVI.save
    ~RESOLVI.setup_annbatch
    ~RESOLVI.setup_anndata
    ~RESOLVI.to_device
    ~RESOLVI.train
    ~RESOLVI.transfer_fields
    ~RESOLVI.update_setup_method_args
    ~RESOLVI.view_anndata_setup
    ~RESOLVI.view_registry
    ~RESOLVI.view_setup_args
    ~RESOLVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: RESOLVI.adata

.. autoattribute:: RESOLVI.adata_manager

.. autoattribute:: RESOLVI.device

.. autoattribute:: RESOLVI.get_normalized_function_name

.. autoattribute:: RESOLVI.history

.. autoattribute:: RESOLVI.is_trained

.. autoattribute:: RESOLVI.registry

.. autoattribute:: RESOLVI.run_id

.. autoattribute:: RESOLVI.run_name

.. autoattribute:: RESOLVI.summary_string

.. autoattribute:: RESOLVI.test_indices

.. autoattribute:: RESOLVI.train_indices

.. autoattribute:: RESOLVI.validation_indices






Methods
~~~~~~~



.. automethod:: RESOLVI.compute_dataset_dependent_priors

.. automethod:: RESOLVI.convert_legacy_save

.. automethod:: RESOLVI.data_registry

.. automethod:: RESOLVI.deregister_manager

.. automethod:: RESOLVI.differential_abundance

.. automethod:: RESOLVI.differential_expression

.. automethod:: RESOLVI.differential_niche_abundance

.. automethod:: RESOLVI.get_anndata_manager

.. automethod:: RESOLVI.get_from_registry

.. automethod:: RESOLVI.get_latent_representation

.. automethod:: RESOLVI.get_neighbor_abundance

.. automethod:: RESOLVI.get_normalized_expression

.. automethod:: RESOLVI.get_normalized_expression_importance

.. automethod:: RESOLVI.get_setup_arg

.. automethod:: RESOLVI.get_state_registry

.. automethod:: RESOLVI.get_var_names

.. automethod:: RESOLVI.load

.. automethod:: RESOLVI.load_query_data

.. automethod:: RESOLVI.load_registry

.. automethod:: RESOLVI.predict

.. automethod:: RESOLVI.prepare_query_anndata

.. automethod:: RESOLVI.prepare_query_mudata

.. automethod:: RESOLVI.register_manager

.. automethod:: RESOLVI.sample_posterior

.. automethod:: RESOLVI.save

.. automethod:: RESOLVI.setup_annbatch

.. automethod:: RESOLVI.setup_anndata

.. automethod:: RESOLVI.to_device

.. automethod:: RESOLVI.train

.. automethod:: RESOLVI.transfer_fields

.. automethod:: RESOLVI.update_setup_method_args

.. automethod:: RESOLVI.view_anndata_setup

.. automethod:: RESOLVI.view_registry

.. automethod:: RESOLVI.view_setup_args

.. automethod:: RESOLVI.view_setup_method_args