scvi.external.SpatialStereoscope
================================

.. currentmodule:: scvi.external

.. add toctree option to make autodoc generate the pages

.. autoclass:: SpatialStereoscope



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~SpatialStereoscope.adata
    ~SpatialStereoscope.adata_manager
    ~SpatialStereoscope.device
    ~SpatialStereoscope.get_normalized_function_name
    ~SpatialStereoscope.history
    ~SpatialStereoscope.is_trained
    ~SpatialStereoscope.registry
    ~SpatialStereoscope.run_id
    ~SpatialStereoscope.run_name
    ~SpatialStereoscope.summary_string
    ~SpatialStereoscope.test_indices
    ~SpatialStereoscope.train_indices
    ~SpatialStereoscope.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~SpatialStereoscope.convert_legacy_save
    ~SpatialStereoscope.data_registry
    ~SpatialStereoscope.deregister_manager
    ~SpatialStereoscope.differential_abundance
    ~SpatialStereoscope.from_rna_model
    ~SpatialStereoscope.get_anndata_manager
    ~SpatialStereoscope.get_from_registry
    ~SpatialStereoscope.get_normalized_expression
    ~SpatialStereoscope.get_proportions
    ~SpatialStereoscope.get_scale_for_ct
    ~SpatialStereoscope.get_setup_arg
    ~SpatialStereoscope.get_state_registry
    ~SpatialStereoscope.get_var_names
    ~SpatialStereoscope.load
    ~SpatialStereoscope.load_registry
    ~SpatialStereoscope.register_manager
    ~SpatialStereoscope.save
    ~SpatialStereoscope.setup_annbatch
    ~SpatialStereoscope.setup_anndata
    ~SpatialStereoscope.to_device
    ~SpatialStereoscope.train
    ~SpatialStereoscope.transfer_fields
    ~SpatialStereoscope.update_setup_method_args
    ~SpatialStereoscope.view_anndata_setup
    ~SpatialStereoscope.view_registry
    ~SpatialStereoscope.view_setup_args
    ~SpatialStereoscope.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: SpatialStereoscope.adata

.. autoattribute:: SpatialStereoscope.adata_manager

.. autoattribute:: SpatialStereoscope.device

.. autoattribute:: SpatialStereoscope.get_normalized_function_name

.. autoattribute:: SpatialStereoscope.history

.. autoattribute:: SpatialStereoscope.is_trained

.. autoattribute:: SpatialStereoscope.registry

.. autoattribute:: SpatialStereoscope.run_id

.. autoattribute:: SpatialStereoscope.run_name

.. autoattribute:: SpatialStereoscope.summary_string

.. autoattribute:: SpatialStereoscope.test_indices

.. autoattribute:: SpatialStereoscope.train_indices

.. autoattribute:: SpatialStereoscope.validation_indices






Methods
~~~~~~~



.. automethod:: SpatialStereoscope.convert_legacy_save

.. automethod:: SpatialStereoscope.data_registry

.. automethod:: SpatialStereoscope.deregister_manager

.. automethod:: SpatialStereoscope.differential_abundance

.. automethod:: SpatialStereoscope.from_rna_model

.. automethod:: SpatialStereoscope.get_anndata_manager

.. automethod:: SpatialStereoscope.get_from_registry

.. automethod:: SpatialStereoscope.get_normalized_expression

.. automethod:: SpatialStereoscope.get_proportions

.. automethod:: SpatialStereoscope.get_scale_for_ct

.. automethod:: SpatialStereoscope.get_setup_arg

.. automethod:: SpatialStereoscope.get_state_registry

.. automethod:: SpatialStereoscope.get_var_names

.. automethod:: SpatialStereoscope.load

.. automethod:: SpatialStereoscope.load_registry

.. automethod:: SpatialStereoscope.register_manager

.. automethod:: SpatialStereoscope.save

.. automethod:: SpatialStereoscope.setup_annbatch

.. automethod:: SpatialStereoscope.setup_anndata

.. automethod:: SpatialStereoscope.to_device

.. automethod:: SpatialStereoscope.train

.. automethod:: SpatialStereoscope.transfer_fields

.. automethod:: SpatialStereoscope.update_setup_method_args

.. automethod:: SpatialStereoscope.view_anndata_setup

.. automethod:: SpatialStereoscope.view_registry

.. automethod:: SpatialStereoscope.view_setup_args

.. automethod:: SpatialStereoscope.view_setup_method_args