scvi.model.CondSCVI
===================

.. currentmodule:: scvi.model

.. add toctree option to make autodoc generate the pages

.. autoclass:: CondSCVI



Attributes table
~~~~~~~~~~~~~~~~~~

.. autosummary::

    ~CondSCVI.adata
    ~CondSCVI.adata_manager
    ~CondSCVI.device
    ~CondSCVI.get_normalized_function_name
    ~CondSCVI.history
    ~CondSCVI.is_trained
    ~CondSCVI.registry
    ~CondSCVI.run_id
    ~CondSCVI.run_name
    ~CondSCVI.summary_string
    ~CondSCVI.test_indices
    ~CondSCVI.train_indices
    ~CondSCVI.validation_indices





Methods table
~~~~~~~~~~~~~

.. autosummary::

    ~CondSCVI.confusion_coarse_celltypes
    ~CondSCVI.convert_legacy_save
    ~CondSCVI.data_registry
    ~CondSCVI.deregister_manager
    ~CondSCVI.differential_abundance
    ~CondSCVI.differential_expression
    ~CondSCVI.get_aggregated_posterior
    ~CondSCVI.get_anndata_manager
    ~CondSCVI.get_elbo
    ~CondSCVI.get_feature_correlation_matrix
    ~CondSCVI.get_from_registry
    ~CondSCVI.get_importance_weights
    ~CondSCVI.get_latent_library_size
    ~CondSCVI.get_latent_representation
    ~CondSCVI.get_likelihood_parameters
    ~CondSCVI.get_marginal_ll
    ~CondSCVI.get_normalized_expression
    ~CondSCVI.get_reconstruction_error
    ~CondSCVI.get_setup_arg
    ~CondSCVI.get_state_registry
    ~CondSCVI.get_vamp_prior
    ~CondSCVI.get_var_names
    ~CondSCVI.load
    ~CondSCVI.load_registry
    ~CondSCVI.posterior_predictive_sample
    ~CondSCVI.predict
    ~CondSCVI.register_manager
    ~CondSCVI.save
    ~CondSCVI.setup_annbatch
    ~CondSCVI.setup_anndata
    ~CondSCVI.to_device
    ~CondSCVI.train
    ~CondSCVI.transfer_fields
    ~CondSCVI.update_setup_method_args
    ~CondSCVI.view_anndata_setup
    ~CondSCVI.view_registry
    ~CondSCVI.view_setup_args
    ~CondSCVI.view_setup_method_args





Attributes
~~~~~~~~~~~



.. autoattribute:: CondSCVI.adata

.. autoattribute:: CondSCVI.adata_manager

.. autoattribute:: CondSCVI.device

.. autoattribute:: CondSCVI.get_normalized_function_name

.. autoattribute:: CondSCVI.history

.. autoattribute:: CondSCVI.is_trained

.. autoattribute:: CondSCVI.registry

.. autoattribute:: CondSCVI.run_id

.. autoattribute:: CondSCVI.run_name

.. autoattribute:: CondSCVI.summary_string

.. autoattribute:: CondSCVI.test_indices

.. autoattribute:: CondSCVI.train_indices

.. autoattribute:: CondSCVI.validation_indices






Methods
~~~~~~~



.. automethod:: CondSCVI.confusion_coarse_celltypes

.. automethod:: CondSCVI.convert_legacy_save

.. automethod:: CondSCVI.data_registry

.. automethod:: CondSCVI.deregister_manager

.. automethod:: CondSCVI.differential_abundance

.. automethod:: CondSCVI.differential_expression

.. automethod:: CondSCVI.get_aggregated_posterior

.. automethod:: CondSCVI.get_anndata_manager

.. automethod:: CondSCVI.get_elbo

.. automethod:: CondSCVI.get_feature_correlation_matrix

.. automethod:: CondSCVI.get_from_registry

.. automethod:: CondSCVI.get_importance_weights

.. automethod:: CondSCVI.get_latent_library_size

.. automethod:: CondSCVI.get_latent_representation

.. automethod:: CondSCVI.get_likelihood_parameters

.. automethod:: CondSCVI.get_marginal_ll

.. automethod:: CondSCVI.get_normalized_expression

.. automethod:: CondSCVI.get_reconstruction_error

.. automethod:: CondSCVI.get_setup_arg

.. automethod:: CondSCVI.get_state_registry

.. automethod:: CondSCVI.get_vamp_prior

.. automethod:: CondSCVI.get_var_names

.. automethod:: CondSCVI.load

.. automethod:: CondSCVI.load_registry

.. automethod:: CondSCVI.posterior_predictive_sample

.. automethod:: CondSCVI.predict

.. automethod:: CondSCVI.register_manager

.. automethod:: CondSCVI.save

.. automethod:: CondSCVI.setup_annbatch

.. automethod:: CondSCVI.setup_anndata

.. automethod:: CondSCVI.to_device

.. automethod:: CondSCVI.train

.. automethod:: CondSCVI.transfer_fields

.. automethod:: CondSCVI.update_setup_method_args

.. automethod:: CondSCVI.view_anndata_setup

.. automethod:: CondSCVI.view_registry

.. automethod:: CondSCVI.view_setup_args

.. automethod:: CondSCVI.view_setup_method_args