scvi.external.GIMVI.get_latent_representation

GIMVI.get_latent_representation(adatas=None, deterministic=True, batch_size=128)[source]

Return the latent space embedding for each dataset.

Parameters
adatas : List[AnnData] | NoneOptional[List[AnnData]] (default: None)

List of adata seq and adata spatial.

deterministic : boolbool (default: True)

If true, use the mean of the encoder instead of a Gaussian sample.

batch_size : intint (default: 128)

Minibatch size for data loading into model.

Return type

List[ndarray]List[ndarray]