scvi.external.SOLO.predict

SOLO.predict(soft=True, include_simulated_doublets=False)[source]

Return doublet predictions.

Parameters
soft : boolbool (default: True)

Return probabilities instead of class label

include_simulated_doublets : boolbool (default: False)

Return probabilities for simulated doublets as well.

Return type

DataFrameDataFrame

Returns

DataFrame with prediction, index corresponding to cell barcode.