New in 0.7.0 (2020-10-14)¶
scvi is now scvi-tools. Version 0.7 introduces many breaking changes. The best way to learn how to use scvi-tools is with our documentation and tutorials.
New high-level API and data loading, please see tutorials and examples for usage.
GeneExpressionDataset and associated classes have been removed.
Built-in datasets now return AnnData objects.
scvi-tools now relies entirely on the AnnData_ format.
scvi.models has been moved to scvi.core.module.
Posterior classes have been reduced to wrappers on DataLoaders
scvi.inference has been split to scvi.core.data_loaders for AnnDataLoader classes and scvi.core.trainers for trainer classes.
Usage of classes like Trainer and AnnDataLoader now require the AnnData data object as input.