HematoDataset¶

class scvi.dataset.HematoDataset(save_path='data/HEMATO/', delayed_populating=False)[source]¶

Bases: scvi.dataset.dataset.DownloadableDataset

Loads the hemato dataset.

This dataset contains continuous gene expression variations from hematopoeitic progenitor cells [31] contains 4,016 cells and 7,397 genes. We removed the library basal-bm1 which was of poor quality based on authors recommendation. We use their population balance analysis result as a potential function for differentiation.

Examples

>>> gene_dataset = HematoDataset()

Methods Summary

populate()

Populates a DonwloadableDataset object’s data attributes.

Methods Documentation

populate()[source]¶

Populates a DonwloadableDataset object’s data attributes.

E.g by calling one of GeneExpressionDataset’s populate_from... methods.