SeqFishPlusDataset

class scvi.dataset.SeqFishPlusDataset(tissue_region='subventricular cortex', save_path='data', delayed_populating=False)

Bases: scvi.dataset.dataset.DownloadableDataset

seqFISH+ can image mRNAs for 10,000 genes in single cells—with high accuracy and sub-diffraction-limit resolution—in the cortex, subventricular zone and olfactory bulb of mouse brain

Parameters

• tissue_region (strstr) – Region of the mouse brain, Either “subventricular cortex” or “olfactory bulb”

• save_path (strstr) – Location to use when saving/loading the SeqFish+ data.

• delayed_populating (boolbool) – Switch for delayed populating mechanism.

Methods Summary

populate()

Populates a DonwloadableDataset object’s data attributes.

Methods Documentation

populate()

Populates a DonwloadableDataset object’s data attributes.

E.g by calling one of GeneExpressionDataset’s populate_from... methods.