AnnDatasetFromAnnData(ad[, batch_label, …])
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Forms a GeneExpressionDataset from a anndata.AnnData object. |
DownloadableAnnDataset([filename, …])
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Forms a DownloadableDataset from a .h5ad file using the anndata package. |
BrainLargeDataset([filename, save_path, …])
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Loads brain-large dataset. |
CiteSeqDataset([name, save_path, …])
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Allows to form 3 different CiteSeq datasets. |
CbmcDataset([save_path, delayed_populating])
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Loads cbmc dataset. |
CellMeasurement(name, data, …)
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CortexDataset([save_path, genes_to_keep, …])
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Loads cortex dataset. |
CsvDataset(filename[, save_path, url, …])
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Loads a .csv file. |
BreastCancerDataset([save_path, …])
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MouseOBDataset([save_path, delayed_populating])
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GeneExpressionDataset()
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Generic class representing RNA counts and annotation information. |
DownloadableDataset([urls, filenames, …])
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Sub-class of GeneExpressionDataset which downloads its data to disk and then populates its attributes with it. |
Dataset10X([dataset_name, filename, …])
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Loads a file from 10x website. |
BrainSmallDataset([save_path, …])
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This dataset consists in 9,128 mouse brain cells profiled using 10x Genomics. |
HematoDataset([save_path, delayed_populating])
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Loads the hemato dataset. |
LoomDataset(filename[, save_path, url, …])
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Loads a potentially remote .loom file. |
RetinaDataset([save_path, delayed_populating])
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Loads retina dataset. |
FrontalCortexDropseqDataset([save_path, …])
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“Load the cells from the mouse frontal cortex sequenced by the Dropseq technology (Saunders et al., 2018) |
PreFrontalCortexStarmapDataset([save_path, …])
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Loads a starMAP dataset of 3,704 cells and 166 genes from the mouse pre-frontal cortex (Wang et al., 2018) |
PbmcDataset([save_path, save_path_10X, …])
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Loads pbmc dataset. |
PurifiedPBMCDataset([save_path, …])
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Purified PBMC dataset from: “Massively parallel digital transcriptional profiling of single cells”. |
SeqfishDataset([save_path, delayed_populating])
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SeqFishPlusDataset([tissue_region, …])
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seqFISH+ can image mRNAs for 10,000 genes in single cells—with high accuracy and sub-diffraction-limit resolution—in the cortex, subventricular zone and olfactory bulb of mouse brain |
SmfishDataset([save_path, …])
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Loads osmFISH data of mouse cortex cells from the Linarsson lab. |
SyntheticDataset([batch_size, nb_genes, …])
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SyntheticRandomDataset([mu, theta, dropout, …])
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SyntheticDatasetCorr([n_cells_cluster, …])
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ZISyntheticDatasetCorr([dropout_coef_high, …])
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