scvi.data.cortex#

scvi.data.cortex(save_path='data/')[source]#

Loads cortex dataset.

The Mouse Cortex Cells dataset contains 3005 mouse cortex cells and gold-standard labels for seven distinct cell types. Each cell type corresponds to a cluster to recover.

Parameters:
save_path : str (default: 'data/')

Location to use when saving/loading the data.

Return type:

AnnData

Returns:

AnnData with batch info (.obs['batch']) and label info (.obs['labels'])

Examples

>>> import scvi
>>> adata = scvi.data.cortex()