scvi.data.cortex

Contents

scvi.data.cortex#

scvi.data.cortex(save_path='data/')[source]#

Loads cortex dataset.

The Mouse Cortex Cells dataset contains 3005 mouse cortex cells and gold-standard labels for seven distinct cell types. Each cell type corresponds to a cluster to recover.

Parameters:: save_path (str (default: 'data/')) – Location to use when saving/loading the data.
Return type:: AnnData
Returns:: AnnData with batch info (.obs['batch']) and label info (.obs['labels'])

Examples

>>> import scvi
>>> adata = scvi.data.cortex()