scvi.data.spleen_lymph_cite_seq#
- scvi.data.spleen_lymph_cite_seq(save_path='data/', protein_join='inner', remove_outliers=True)[source]#
Immune cells from the murine spleen and lymph nodes [Gayoso et al., 2021].
This dataset was used throughout the totalVI manuscript, and named SLN-all.
- Parameters:
- Return type:
- Returns:
AnnData with batch info (
.obs['batch']
), label info (.obs['cell_types']
), protein expression (.obsm["protein_expression"]
), and tissue (.obs['tissue']
).Missing protein values are zero, when
protein_join == "outer
and are identified duringAnnData
setup.
Examples
>>> import scvi >>> adata = scvi.data.spleen_lymph_cite_seq()