scRNA-seq#
- Atlas-level integration of lung data
- Integrating datasets with scVI in R
- Integration and label transfer with Tabula Muris
- Reference mapping with scvi-tools
- Querying the Human Lung Cell Atlas
- Seed labeling with scANVI
- Linearly decoded VAE
- Identification of zero-inflated genes
- Annotation with CellAssign
- Topic Modeling with Amortized LDA
- Differential expression on C. elegans data
- Isolating perturbation-induced variations with contrastiveVI
- Benchmarking the scANVI fix
- MrVI Quick Start Tutorial
- Preprocessing and model fitting
- Visualize cell embeddings and sample distances
- Differential expression and differential abundance analysis