scvi.train.SemiSupervisedAdversarialTrainingPlan

scvi.train.SemiSupervisedAdversarialTrainingPlan#

class scvi.train.SemiSupervisedAdversarialTrainingPlan(module, n_classes, *, key_adversarial='batch', optimizer='Adam', optimizer_creator=None, classification_ratio=50, lr=0.001, weight_decay=1e-06, n_steps_kl_warmup=None, n_epochs_kl_warmup=400, reduce_lr_on_plateau=False, lr_factor=0.6, lr_patience=30, lr_threshold=0.0, lr_scheduler_metric='elbo_validation', lr_min=0, adversarial_classifier=False, scale_adversarial_loss='auto', **loss_kwargs)[source]#

Bases: SemiSupervisedTrainingPlan

Lightning module task for SemiSupervised Training with Adversarial Loss.

Parameters:

  • module (BaseModuleClass) – A module instance from class BaseModuleClass.

  • optimizer (Literal['Adam', 'AdamW', 'Custom'] (default: 'Adam')) – One of “Adam” (Adam), “AdamW” (AdamW), or “Custom”, which requires a custom optimizer creator callable to be passed via optimizer_creator.

  • optimizer_creator (Callable[[Iterable[Tensor]], Optimizer] | None (default: None)) – A callable taking in parameters and returning a Optimizer. This allows using any PyTorch optimizer with custom hyperparameters.

  • n_classes (int) – The number of classes in the labeled dataset.

  • classification_ratio (int (default: 50)) – Weight of the classification_loss in loss function

  • lr (float (default: 0.001)) – Learning rate used for optimization Adam.

  • weight_decay (float (default: 1e-06)) – Weight decay used in Adam.

  • eps – eps used for optimization, when optimizer_creator is None.

  • n_steps_kl_warmup (int | None (default: None)) – Number of training steps (minibatches) to scale weight on KL divergences from 0 to 1. Only activated when n_epochs_kl_warmup is set to None.

  • n_epochs_kl_warmup (int | None (default: 400)) – Number of epochs to scale weight on KL divergences from 0 to 1. Overrides n_steps_kl_warmup when both are not None.

  • reduce_lr_on_plateau (bool (default: False)) – Whether to monitor validation loss and reduce learning rate when validation set lr_scheduler_metric plateaus.

  • lr_factor (float (default: 0.6)) – Factor to reduce the learning rate.

  • lr_patience (int (default: 30)) – Number of epochs with no improvement after which the learning rate will be reduced.

  • lr_threshold (float (default: 0.0)) – Threshold for measuring the new optimum.

  • lr_scheduler_metric (Literal['elbo_validation', 'reconstruction_loss_validation', 'kl_local_validation'] (default: 'elbo_validation')) – Which metric to track for learning rate reduction.

  • lr_min (float (default: 0)) – Minimum learning rate allowed

  • adversarial_classifier (bool | Classifier (default: False)) – Whether to use adversarial classifier in the latent space

  • scale_adversarial_loss (Union[float, Literal['auto']] (default: 'auto')) – Scaling factor on the adversarial components of the loss. By default, adversarial loss is scaled from 1 to 0 following the opposite of kl warmup.

  • **loss_kwargs – Keyword args to pass to the loss method of the module. kl_weight should not be passed here and is handled automatically.

Attributes table#

training

Methods table#

configure_optimizers()

Configure optimizers for adversarial training.

loss_adversarial_classifier(z, batch_index)

Loss for adversarial classifier.

on_train_epoch_end()

Update the learning rate via scheduler steps.

on_validation_epoch_end()

Update the learning rate via scheduler steps.

training_step(batch, batch_idx)

Training step for semi-supervised training.

Attributes#

SemiSupervisedAdversarialTrainingPlan.training: bool#

Methods#

SemiSupervisedAdversarialTrainingPlan.configure_optimizers()[source]#

Configure optimizers for adversarial training.

SemiSupervisedAdversarialTrainingPlan.loss_adversarial_classifier(z, batch_index, predict_true_class=True)[source]#

Loss for adversarial classifier.

SemiSupervisedAdversarialTrainingPlan.on_train_epoch_end()[source]#

Update the learning rate via scheduler steps.

SemiSupervisedAdversarialTrainingPlan.on_validation_epoch_end()[source]#

Update the learning rate via scheduler steps.

Return type:

None

SemiSupervisedAdversarialTrainingPlan.training_step(batch, batch_idx)[source]#

Training step for semi-supervised training.

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