scBasset

Contents

scBasset#

scBasset [1] (Python class SCBASSET) posits a sequence-based method for representation learning of scATAC-seq data.

The advantages of ScBasset are:

  • Sequence representations allow for TF motif discovery and other sequence-based analyses.

  • scBasset is fast and scalable.

The limitations of scBasset include:

  • scBasset cannot currently leverage unobserved data and thus cannot curently be used for tranfer learning tasks.

Overview#

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