scvi.data.prefrontalcortex_starmap

scvi.data.prefrontalcortex_starmap(save_path='data/', run_setup_anndata=True)[source]

Loads a starMAP dataset of mouse pre-frontal cortex (Wang et al., 2018).

3,704 cells and 166 genes.

Parameters
save_path : strstr (default: 'data/')

Location to use when saving/loading the data.

run_setup_anndata : boolbool (default: True)

If true, runs setup_anndata() on dataset before returning

Return type

AnnDataAnnData

Returns

AnnData with batch info (.obs['batch']), label info (.obs['labels']), spatial info (.obs['x_coord'], .obs['y_coord'])

Examples

>>> import scvi
>>> adata = scvi.data.prefrontalcortex_starmap()